Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015846637.1_cds_XP_016509736.1_22642
CDS Infomation

[gene=LOC107827166] [db_xref=GeneID:107827166] [protein=spermidine hydroxycinnamoyl transferase-like isoform X2] [protein_id=XP_016509736.1] [location=complement(join(43788..44123,44155..45165))] [gbkey=CDS]
Sequence

ATGAAGGTTAGCTTGAAGAACCATTGGGTAGTGAAGCCAGCAGAGCCAACATGGAATGGC
ACTGTCTCCTTATCAGAATGTGATCAAACTTTTGCTGTAACTCATGTGCCAACCATTTAT
TACTACAGGTTTTGCCAGGATTGTCTTCCATCAACAGACAACATCATCAAAACCCTCAGG
ACCTCACTAAGCAAAGCACTAGTACACTTCTATCCATTGGCTGGTCGTTTGCGATGGATC
GCTGGGTCCCGCCTCGAGCTCGACTGTAACGCCTCGGGAGTCGTGTTCACGGAAGCTGAA
ACCGAAGCCAAGCTGGATGATCTTGGTGATTTCTCGCCATCCCCTGACTCTAATAGCTTG
TTTCCCCGTGTAGACTACACAATCCCAATTGATGAACTCCCTTTGTTGTTTGTTCAGCTT
ACTAAGTTTCAGTGTAGTGGTGTTGCACTAAGTTTTGCAATATCACATGCTGTGGTTGAT
GGCCAAAGTGCTCTTTACTTCCTCACCGAATGGGCTAGCCTTGCTCGCGGAGAGCCATTA
GGGAACGAACCTTTTCATGATCGAAGATTGCTCCGAGCAGGAGAACCTCCAATTGCATCT
CCAACGTTTGAGCATTTACAGTTTAATCAACCACCACTTTTGCTAGGGAAATCCAGCAGT
GAAGAGGAGAAGAAAAATGAAACAAAGGGTTCCATGCTAAAACTTACAAAAAATCAAGTT
GAAATGTTGAGAAAAAAGGCGAACCAAGGTAACCAAGGGCGTAGTTACACACGTTATGAA
GTTGTGACTGCACATATATGGAGATGTGCATGCAAGGCAAGAGGTCATAAATTTGAGCAG
CCTACTAATTTGTGCATTTGTGTTAACATACGCAAAATAATGCAACCACATTTGCCTAAA
TCCTTTTTTGGTAATGCCATAGTTGATGTTATTGCCAATGGCGTCTCGGGTGACATCACC
TCGAGGCCATTGGAGTATGCTGCTCGAAGGGTACGAGCAGCCATTAAAATCGTGACGAGT
GATTATGCAAATTCGACGATTGATTTCTTAAAAAACCAGGAGGATTTGTCAAAATATCAA
GATATTCATGCATTTAGAAGCAAGGAAGGTCCTTTTTATGGAAACCCTAATCTTGGGGTT
ATAAGTTGGATAAGTTTGCCATTATTAGGATTGGATTTTGGGTGGGGAAAAGAGATTCAT
ATGAGCCCCGGAACTCATGAATATGATGGTGATTGCGTGATACTTCCAGGAAATGAAGGG
GATGGATCTTTGACTGTCGCAATCATTCTTCAAGCTGTTCATGTGGATGCTTTCAAGAAA
TTCTTCTATGAAGACATTGAATGTTGA

Peptide Sequence

PEP ID

XP_016509736.1
PEP Infomation

PREDICTED: spermidine hydroxycinnamoyl transferase-like isoform X2 [Nicotiana tabacum]
Sequence

MKVSLKNHWVVKPAEPTWNGTVSLSECDQTFAVTHVPTIYYYRFCQDCLPSTDNIIKTLR
TSLSKALVHFYPLAGRLRWIAGSRLELDCNASGVVFTEAETEAKLDDLGDFSPSPDSNSL
FPRVDYTIPIDELPLLFVQLTKFQCSGVALSFAISHAVVDGQSALYFLTEWASLARGEPL
GNEPFHDRRLLRAGEPPIASPTFEHLQFNQPPLLLGKSSSEEEKKNETKGSMLKLTKNQV
EMLRKKANQGNQGRSYTRYEVVTAHIWRCACKARGHKFEQPTNLCICVNIRKIMQPHLPK
SFFGNAIVDVIANGVSGDITSRPLEYAARRVRAAIKIVTSDYANSTIDFLKNQEDLSKYQ
DIHAFRSKEGPFYGNPNLGVISWISLPLLGLDFGWGKEIHMSPGTHEYDGDCVILPGNEG
DGSLTVAIILQAVHVDAFKKFFYEDIEC

Transcript Sequence

Gene sequence data has not been registered.